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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73483747_73494522_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73483747 - 73494522
Intron Length:
10776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
TTATTTTTAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
PGDKSRGLLLDIQDSQFSPC
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.3
36.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
72.3
0.5
1.1
75.8
37
Minor 5ss
46.1
-0.4
2.4
50.4
46
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037162
73471950 - 73537868
65919
ENSAPLT00000036574
73471950 - 73532705
60756
ENSAPLT00000046211
73483551 - 73531388
47838
ENSAPLT00000030028
73471950 - 73538777
66828
ENSAPLT00000037430
73471950 - 73536722
64773