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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73494641_73496139_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73494641 - 73496139
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
ATGTACTGACTT
Flanking Amino Acid:
QQSEMDFIPLRGVPDVSCAS
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.5
35.6
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
77.4
0.62
0.8
72.9
32
Minor 5ss
29.3
-2.4
3.5
40.3
46.1
Minor BPS
48.4
-0
1.9
68.21
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037162
73471950 - 73537868
65919
ENSAPLT00000036574
73471950 - 73532705
60756
ENSAPLT00000030028
73471950 - 73538777
66828
ENSAPLT00000046211
73483551 - 73531388
47838
ENSAPLT00000037430
73471950 - 73536722
64773