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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73498364_73501618_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73498364 - 73501618
Intron Length:
3255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGTTCCTTATTT
Flanking Amino Acid:
EEFNIEERIPIYLRNLGIDQ
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.1
32.4
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
86.6
0.82
0.9
88.2
29.1
Minor 5ss
44.1
-0.6
2.9
63.8
41.6
Minor BPS
75.6
0.88
1.5
88.81
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037162
73471950 - 73537868
65919
ENSAPLT00000036574
73471950 - 73532705
60756
ENSAPLT00000030028
73471950 - 73538777
66828
ENSAPLT00000046211
73483551 - 73531388
47838
ENSAPLT00000037430
73471950 - 73536722
64773