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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73501776_73503386_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73501776 - 73503386
Intron Length:
1611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCGGG
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CCAAATTTAAAT
Flanking Amino Acid:
DTLARTQQPQGEFLAAVEVT
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
52.5
44.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
88.3
0.86
0.6
84.7
22.9
Minor 5ss
41.9
-0.9
3.2
56
48.2
Minor BPS
48.2
-0
1.7
59.63
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037162
73471950 - 73537868
65919
ENSAPLT00000036574
73471950 - 73532705
60756
ENSAPLT00000030028
73471950 - 73538777
66828
ENSAPLT00000046211
73483551 - 73531388
47838
ENSAPLT00000037430
73471950 - 73536722
64773