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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73505768_73512053_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73505768 - 73512053
Intron Length:
6286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCAAT
U12 Branch Point Sequence:
GTCCACGTAACC
Flanking Amino Acid:
LSAKKSGLTKGARRCSLEAA
Intron Amino Acid Position:
1534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.8
39.8
Major BPS
69.1
0.47
1.2
77
34.1
Major PPT
81.9
0.72
0.9
76.3
37.7
Minor 5ss
31.7
-2.1
3.1
39.5
46
Minor BPS
47.8
-0.1
2.2
61.69
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037430
73471950 - 73536722
64773
ENSAPLT00000037162
73471950 - 73537868
65919
ENSAPLT00000036574
73471950 - 73532705
60756
ENSAPLT00000030028
73471950 - 73538777
66828
ENSAPLT00000046211
73483551 - 73531388
47838