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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73513795_73514759_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73513795 - 73514759
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TCCATCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCTGTCAATT
Flanking Amino Acid:
NKISSFLRQGDQPLLLPYKP
Intron Amino Acid Position:
2114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.2
0.59
0.8
69.5
31.1
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
50
0.08
2.2
77.15
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037430
73471950 - 73536722
64773