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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73514886_73516362_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73514886 - 73516362
Intron Length:
1477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAC
U12 Branch Point Sequence:
TTGCTCGTAATT
Flanking Amino Acid:
SETSVKSSHSGSNDALPSRF
Intron Amino Acid Position:
1942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
83.9
34.3
Major BPS
67
0.42
1.1
58
38.5
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
40.7
-1
3.1
60.4
44
Minor BPS
56
0.27
2
76.51
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037162
73471950 - 73537868
65919
ENSAPLT00000036574
73471950 - 73532705
60756
ENSAPLT00000030028
73471950 - 73538777
66828
ENSAPLT00000046211
73483551 - 73531388
47838
ENSAPLT00000037430
73471950 - 73536722
64773