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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73521420_73524767_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73521420 - 73524767
Intron Length:
3348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTAAGAATT
Flanking Amino Acid:
EKHRKRKETQKAIRVSLDST
Intron Amino Acid Position:
2398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.4
39.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.2
0.66
0.7
69.9
31
Minor 5ss
33.3
-1.9
3.5
49.7
46.5
Minor BPS
50.3
0.09
1.9
78.91
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046211
73483551 - 73531388
47838
ENSAPLT00000030028
73471950 - 73538777
66828