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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73521444_73524767_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73521444 - 73524767
Intron Length:
3324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTAAGAATT
Flanking Amino Acid:
TQVRGQLDQKKAIRVSLDST
Intron Amino Acid Position:
2406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.2
0.66
0.7
69.9
31
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
50.3
0.09
1.9
78.91
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037430
73471950 - 73536722
64773
ENSAPLT00000037162
73471950 - 73537868
65919
ENSAPLT00000036574
73471950 - 73532705
60756