Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73524883_73526013_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

73524883 - 73526013

Intron Length:

1131

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGATCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTGTTTTGATCT

Flanking Amino Acid:

TRMLNKGVQAGDLEIVNSAT

Intron Amino Acid Position:

2436

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

77.5

33.5

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

83.9

0.76

0.8

77.4

Minor 5ss

-1

56.7

47.6

Minor BPS

0.27

1.7

75.91

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021920

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037162

73471950 - 73537868

65919

ENSAPLT00000036574

73471950 - 73532705

60756

ENSAPLT00000030028

73471950 - 73538777

66828

ENSAPLT00000046211

73483551 - 73531388

47838

ENSAPLT00000037430

73471950 - 73536722

64773