About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73527717_73528801_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73527717 - 73528801
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
AATCCCATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTTTTGTAATC
Flanking Amino Acid:
FRPLVKLTLQEALAVHRPDF
Intron Amino Acid Position:
2576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
63.7
0.31
0.9
60
35.6
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
56
0.17
2
69.9
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037162
73471950 - 73537868
65919
ENSAPLT00000036574
73471950 - 73532705
60756
ENSAPLT00000030028
73471950 - 73538777
66828
ENSAPLT00000046211
73483551 - 73531388
47838
ENSAPLT00000037430
73471950 - 73536722
64773