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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73528986_73529198_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73528986 - 73529198
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTTTG
5'SS Class:
major
3'SS Sequence:
ACTTTCTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTATCCTAAAAC
Flanking Amino Acid:
RNASHMLSDRGYLVKEKRKT
Intron Amino Acid Position:
2637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
69.9
43.4
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
76
0.58
0.9
74.6
34.7
Minor 5ss
48.3
-0.2
2.8
67
44.3
Minor BPS
66.3
0.49
1.8
76.77
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037162
73471950 - 73537868
65919
ENSAPLT00000036574
73471950 - 73532705
60756
ENSAPLT00000030028
73471950 - 73538777
66828
ENSAPLT00000046211
73483551 - 73531388
47838
ENSAPLT00000037430
73471950 - 73536722
64773