Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73532706_73537846_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

73532706 - 73537846

Intron Length:

5141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTGTTTTTATCT

Flanking Amino Acid:

YRLKAQLYKMKITNRVLGRK

Intron Amino Acid Position:

2692

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

77.9

36.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

91.2

0.93

0.7

89.2

27.3

Minor 5ss

37.4

-1.4

3.6

54.1

45.6

Minor BPS

67.8

0.64

1.5

82.83

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021920

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030028

73471950 - 73538777

66828