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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73536918_73537846_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73536918 - 73537846
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTACGTATA
5'SS Class:
major
3'SS Sequence:
TTTTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATCT
Flanking Amino Acid:
HSDSCQQLRILKSPTVS*
Intron Amino Acid Position:
2775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
72.9
37.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.2
0.93
0.7
89.2
27.3
Minor 5ss
40.8
-1
3.1
56.5
42.2
Minor BPS
67.8
0.64
1.5
82.83
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037162
73471950 - 73537868
65919