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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73544786_73547325_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73544786 - 73547325
Intron Length:
2540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCACAT
U12 Branch Point Sequence:
TGCTCACCAACT
Flanking Amino Acid:
PGQGGAAGPRGPASHGERVT
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
65.1
0.38
1.1
71.2
35.2
Major PPT
80.8
0.69
0.7
73.4
31.6
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
47.8
-0
2.1
71.5
44.5

Associated Gene:

Gene:
ADAM33
Ensembl Gene ID:
ENSAPLG00000005645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005890
73544662 - 73566452
21791