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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73547409_73552559_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73547409 - 73552559
Intron Length:
5151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCTTCCTGACCC
Flanking Amino Acid:
TRRAVSMDKQEPAPARAEVA
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
86.8
0.83
0.7
81.5
23.5
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
57
0.2
1.8
66.78
44.8

Associated Gene:

Gene:
ADAM33
Ensembl Gene ID:
ENSAPLG00000005645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005890
73544662 - 73566452
21791