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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73555618_73555730_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73555618 - 73555730
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CACCTCTTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCTTCCTCCATC
Flanking Amino Acid:
ELFIVADNTLFRNQNLNLGL
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
74.1
0.54
0.8
68.2
31.5
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
49.8
-0
2
61.86
44.3

Associated Gene:

Gene:
ADAM33
Ensembl Gene ID:
ENSAPLG00000005645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005890
73544662 - 73566452
21791