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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73556475_73557143_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73556475 - 73557143
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
TTTCCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
ACCCCCAAAACT
Flanking Amino Acid:
SADNSGGVSMDHSEHPIGAA
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
60.5
44.3
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
83.8
0.76
0.7
77.9
23.9
Minor 5ss
28.8
-2.4
3.5
34.5
43.8
Minor BPS
47.8
-0
2
64.6
45.5

Associated Gene:

Gene:
ADAM33
Ensembl Gene ID:
ENSAPLG00000005645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005890
73544662 - 73566452
21791