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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73557287_73558435_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73557287 - 73558435
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
GTCCCCTGCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
CCCTCCCCATCT
Flanking Amino Acid:
QGGCVMAAATGHPFPRVFSS
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
60.8
44.4
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
66.3
0.37
0.9
60.7
35.1
Minor 5ss
29.4
-2.4
3.3
30.1
42.9
Minor BPS
44.4
-0.3
2.1
60.43
48.7

Associated Gene:

Gene:
ADAM33
Ensembl Gene ID:
ENSAPLG00000005645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005890
73544662 - 73566452
21791