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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73558614_73558811_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73558614 - 73558811
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TCTCCCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTGTCTCCATCT
Flanking Amino Acid:
GEDCDCGEVEECTNPCCNAH
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
71.3
0.48
0.8
65.9
28.9
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
44.8
-0.3
2.1
64.44
46.1

Associated Gene:

Gene:
ADAM33
Ensembl Gene ID:
ENSAPLG00000005645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005890
73544662 - 73566452
21791