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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73559326_73559853_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73559326 - 73559853
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TTCCCCCTACCA
Flanking Amino Acid:
HQQCVQLWGPGAWPAPDACF
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
67.3
0.39
0.8
60.4
27.8
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
52.5
0.08
2
69.47
42.4

Associated Gene:

Gene:
ADAM33
Ensembl Gene ID:
ENSAPLG00000005645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005890
73544662 - 73566452
21791