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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73562481_73562666_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73562481 - 73562666
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
CTTTCCCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTTCCCTAACA
Flanking Amino Acid:
SVDSGPVQHDNHEAILITLL
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
65.5
40.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.4
0.64
0.8
73.7
29.8
Minor 5ss
33.6
-1.9
3
48.4
41.1
Minor BPS
74.7
0.77
1.7
84.22
35.9

Associated Gene:

Gene:
ADAM33
Ensembl Gene ID:
ENSAPLG00000005645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005890
73544662 - 73566452
21791