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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73564578_73564904_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73564578 - 73564904
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TTCTTTGTGATC
Flanking Amino Acid:
LPCSPVRTPLVGPKHQPPRR
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
75.1
0.56
1
66.3
44
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
48.7
-0.1
2
63.75
37.1

Associated Gene:

Gene:
ADAM33
Ensembl Gene ID:
ENSAPLG00000005645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005890
73544662 - 73566452
21791