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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7356609_7360552_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7356609 - 7360552
Intron Length:
3944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGGG
5'SS Class:
major
3'SS Sequence:
TGTCATCTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TATTCTGTCATC
Flanking Amino Acid:
ENQGDSKQQNGKIPPKRPPR
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
58
47.1
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
63.2
0.3
1.1
60.3
40.4
Minor 5ss
30.3
-2.3
3.3
31
43.1
Minor BPS
48
-0.1
2.3
66.7
39.8

Associated Gene:

Gene:
PDLIM5
Ensembl Gene ID:
ENSAPLG00000004068
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037074
7286690 - 7409827
123138
ENSAPLT00000022490
7286690 - 7363952
77263
ENSAPLT00000004192
7286690 - 7410363
123674