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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7360571_7360866_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7360571 - 7360866
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATGTT
5'SS Class:
major
3'SS Sequence:
CTCTTTGATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTCTCTTTGATG
Flanking Amino Acid:
KQQNGKIPPKRPPRKHIVDT
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
78.9
35.1
Major BPS
84
0.85
0.9
75
39.9
Major PPT
77.2
0.61
0.9
72.7
36.6
Minor 5ss
38.5
-1.3
3.5
58.4
46.2
Minor BPS
62.7
0.26
1.4
61.38
41.8

Associated Gene:

Gene:
PDLIM5
Ensembl Gene ID:
ENSAPLG00000004068
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037074
7286690 - 7409827
123138
ENSAPLT00000022490
7286690 - 7363952
77263
ENSAPLT00000004192
7286690 - 7410363
123674