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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7361040_7362581_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7361040 - 7362581
Intron Length:
1542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
AGTGCCATAGAA
Flanking Amino Acid:
ILAQITGTDHMKEPEHEAAK
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71.9
39.5
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
34.2
-1.8
2.9
48
41.7
Minor BPS
45.1
-0.3
2
57.27
41.4

Associated Gene:

Gene:
PDLIM5
Ensembl Gene ID:
ENSAPLG00000004068
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037074
7286690 - 7409827
123138
ENSAPLT00000022490
7286690 - 7363952
77263
ENSAPLT00000004192
7286690 - 7410363
123674