About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7362619_7363273_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7362619 - 7363273
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTT
Flanking Amino Acid:
EPEHEAAKKTKEKVPMHVFS
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
73.9
33
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.1
0.77
0.7
79.5
26.1
Minor 5ss
35.8
-1.6
2.8
40.4
40
Minor BPS
69.5
0.69
1.5
82.89
39.2

Associated Gene:

Gene:
PDLIM5
Ensembl Gene ID:
ENSAPLG00000004068
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022490
7286690 - 7363952
77263