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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73707577_73730069_F

Intron Information:

Intron Rank:
124272
Intron Class:
major
Intron Phase:
Intron Coordinates:
73707577 - 73730069
Intron Length:
22493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTCATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74
38.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
83.2
0.75
0.8
76.7
36.1
Minor 5ss
30
-2.3
2.9
32.9
41.9
Minor BPS
52.3
0.15
1.7
72.74
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017002
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033407
73669034 - 73730356
61323
ENSAPLT00000020895
73706176 - 73730356
24181