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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73784676_73787766_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73784676 - 73787766
Intron Length:
3091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTCCCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACTGACT
Flanking Amino Acid:
YWSIHHTLMEGMNVLESSPY
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
43.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.3
0.68
0.7
77.8
24
Minor 5ss
35
-1.7
2.7
41.5
44.9
Minor BPS
57.7
0.32
2
81.56
39.8

Associated Gene:

Gene:
GFRA4
Ensembl Gene ID:
ENSAPLG00000005430
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019526
73731509 - 73796407
64899
ENSAPLT00000005631
73778714 - 73796369
17656