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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73822460_73835054_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73822460 - 73835054
Intron Length:
12595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAAAATG
5'SS Class:
major
3'SS Sequence:
TTTATCAAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTTTATCAAAT
Flanking Amino Acid:
QSCWASRRREQLLREMQQMA
Intron Amino Acid Position:
1281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
70
40.3
Major BPS
80
0.75
1
78.6
31
Major PPT
65.6
0.35
1
65.5
40
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
52.2
0.15
1.9
75.7
40.2

Associated Gene:

Gene:
ATRN
Ensembl Gene ID:
ENSAPLG00000004965
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046309
73822192 - 73948543
126352
ENSAPLT00000005186
73809001 - 73948543
139543