Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73834105_73835054_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

73834105 - 73835054

Intron Length:

950

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAAAATG

5'SS Class:

major

3'SS Sequence:

TATCTTTCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAC

U12 Branch Point Sequence:

TGTACCTTATCA

Flanking Amino Acid:

QSCWASRRREGRNTTYPQIQ

Intron Amino Acid Position:

1281

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.2

40.3

Major BPS

78.3

0.7

32.1

Major PPT

76.6

0.6

0.8

36.1

Minor 5ss

32.8

-2

2.9

40.7

45.1

Minor BPS

68.4

0.57

1.6

77.32

39.2

Associated Gene:

Gene:

ATRN

Ensembl Gene ID:

ENSAPLG00000004965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027020

73833437 - 73948543

115107