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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73835134_73845580_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73835134 - 73845580
Intron Length:
10447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
CTCTCCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTCTCCTTTACA
Flanking Amino Acid:
DLVQFFVTFFSCFLSLLLVA
Intron Amino Acid Position:
1254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.1
0.79
0.7
79.2
26.4
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
69.8
0.62
1.7
75.21
42.3

Associated Gene:

Gene:
ATRN
Ensembl Gene ID:
ENSAPLG00000004965
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005186
73809001 - 73948543
139543
ENSAPLT00000046309
73822192 - 73948543
126352
ENSAPLT00000031721
73833099 - 73948543
115445
ENSAPLT00000027020
73833437 - 73948543
115107