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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73845643_73868234_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73845643 - 73868234
Intron Length:
22592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CAGTAACTAACA
Flanking Amino Acid:
SNFTWPIKIQIAFSQHSNFM
Intron Amino Acid Position:
1234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.6
33.2
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
42.5
-0.8
3.4
64.3
47.2
Minor BPS
44.9
-0.3
2.1
55.78
42.4

Associated Gene:

Gene:
ATRN
Ensembl Gene ID:
ENSAPLG00000004965
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027020
73833437 - 73948543
115107
ENSAPLT00000005186
73809001 - 73948543
139543
ENSAPLT00000046309
73822192 - 73948543
126352
ENSAPLT00000031721
73833099 - 73948543
115445