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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73868393_73868792_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73868393 - 73868792
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
CATTTGAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TACTTCTTAACA
Flanking Amino Acid:
LNITWSTSFAAGTQAGEEIP
Intron Amino Acid Position:
1181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
61.4
0.26
1.1
55.9
42.4
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
79.7
0.93
1.1
80.05
35.9

Associated Gene:

Gene:
ATRN
Ensembl Gene ID:
ENSAPLG00000004965
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027020
73833437 - 73948543
115107
ENSAPLT00000005186
73809001 - 73948543
139543
ENSAPLT00000046309
73822192 - 73948543
126352
ENSAPLT00000031721
73833099 - 73948543
115445