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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73890331_73894335_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73890331 - 73894335
Intron Length:
4005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTAATCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTTCCTTAATC
Flanking Amino Acid:
FSSDFMAYDIACNKWSVLPR
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
70.4
0.46
0.8
62.8
37.4
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
85.8
1.1
1
86.11
32.2

Associated Gene:

Gene:
ATRN
Ensembl Gene ID:
ENSAPLG00000004965
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031721
73833099 - 73948543
115445
ENSAPLT00000027020
73833437 - 73948543
115107
ENSAPLT00000005186
73809001 - 73948543
139543
ENSAPLT00000046309
73822192 - 73948543
126352