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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73896654_73897962_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73896654 - 73897962
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTCATTT
Flanking Amino Acid:
YISNVQEYNLATNTWSILQT
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.8
0.8
0.7
84.4
30.1
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
51.2
0.11
1.7
72.11
39.6

Associated Gene:

Gene:
ATRN
Ensembl Gene ID:
ENSAPLG00000004965
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046309
73822192 - 73948543
126352
ENSAPLT00000031721
73833099 - 73948543
115445
ENSAPLT00000027020
73833437 - 73948543
115107
ENSAPLT00000005186
73809001 - 73948543
139543