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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73900014_73901333_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73900014 - 73901333
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTATTATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATAC
Flanking Amino Acid:
FNHSDSQKVLAYDLISEEWL
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.3
74.1
38.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.5
0.8
0.9
80.9
35.5
Minor 5ss
34.8
-1.7
2.8
37.8
40.1
Minor BPS
54
0.11
1.9
72.57
38.1

Associated Gene:

Gene:
ATRN
Ensembl Gene ID:
ENSAPLG00000004965
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046309
73822192 - 73948543
126352
ENSAPLT00000031721
73833099 - 73948543
115445
ENSAPLT00000027020
73833437 - 73948543
115107
ENSAPLT00000005186
73809001 - 73948543
139543