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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73901503_73903688_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73901503 - 73903688
Intron Length:
2186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACTTCTAAAACT
Flanking Amino Acid:
KTCLCSAGWQGPGCSISVPA
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
83
0.74
0.8
76.2
37.8
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
53.9
0.2
1.9
74.84
42.2

Associated Gene:

Gene:
ATRN
Ensembl Gene ID:
ENSAPLG00000004965
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031721
73833099 - 73948543
115445
ENSAPLT00000027020
73833437 - 73948543
115107
ENSAPLT00000005186
73809001 - 73948543
139543
ENSAPLT00000046309
73822192 - 73948543
126352