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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74017743_74019042_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74017743 - 74019042
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TGATATTTACGA
Flanking Amino Acid:
SRIGIPYSCQGHLQIFDMFI
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
74.9
38.1
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
88.9
0.88
0.7
84.3
30.2
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
46
-0.3
2
57.6
41.8

Associated Gene:

Gene:
C20orf194
Ensembl Gene ID:
ENSAPLG00000004579
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004776
74012670 - 74067294
54625