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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74019150_74021512_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74019150 - 74021512
Intron Length:
2363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
AAATATCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTCCATTTAAAA
Flanking Amino Acid:
GDGFFTMKYELMDVSVDLWK
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
71
0.47
1
63.1
42.7
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
50.5
0.01
1.6
59.99
39.4

Associated Gene:

Gene:
C20orf194
Ensembl Gene ID:
ENSAPLG00000004579
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004776
74012670 - 74067294
54625