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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74021591_74023627_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74021591 - 74023627
Intron Length:
2037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATAATTAATG
Flanking Amino Acid:
PVSLEDLVFEDLMTFEHQWT
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
53
-0
1.8
60.2
41

Associated Gene:

Gene:
C20orf194
Ensembl Gene ID:
ENSAPLG00000004579
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004776
74012670 - 74067294
54625