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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74023727_74024319_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74023727 - 74024319
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCCTG
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGCTTATTAATC
Flanking Amino Acid:
LELSESQAGEPFRSYFSHGM
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.3
46
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
47.6
-0.2
2.8
64.4
47
Minor BPS
61
0.32
1.6
67.66
38.1

Associated Gene:

Gene:
C20orf194
Ensembl Gene ID:
ENSAPLG00000004579
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004776
74012670 - 74067294
54625