Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74028342_74029817_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

74028342 - 74029817

Intron Length:

1476

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTTGC

5'SS Class:

major

3'SS Sequence:

TGTTTCTCTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAA

U12 Branch Point Sequence:

TGTCTAGTAAAC

Flanking Amino Acid:

DSEMHKKPEQVMLLSQIYTA

Intron Amino Acid Position:

280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.1

66.1

40.7

Major BPS

67.4

0.43

1.1

67.9

36.3

Major PPT

87.6

0.85

0.7

85.4

29.3

Minor 5ss

42.5

-0.8

2.8

53.5

43.7

Minor BPS

43.8

-0.4

2.2

58.97

39.3

Associated Gene:

Gene:

C20orf194

Ensembl Gene ID:

ENSAPLG00000004579

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038208

74026963 - 74067294

40332

ENSAPLT00000004776

74012670 - 74067294

54625