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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74030413_74030673_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74030413 - 74030673
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTCACCA
Flanking Amino Acid:
LHLTQLKTALSSKIAFQIQA
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1.1
84.4
33.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
91.9
0.94
0.6
88.3
21.4
Minor 5ss
43.9
-0.7
2.6
61.4
42.9
Minor BPS
52.2
0.07
1.8
67.57
39.2

Associated Gene:

Gene:
C20orf194
Ensembl Gene ID:
ENSAPLG00000004579
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038208
74026963 - 74067294
40332
ENSAPLT00000004776
74012670 - 74067294
54625