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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74116333_74119659_F

Intron Information:

Intron Rank:
126144
Intron Class:
major
Intron Phase:
Intron Coordinates:
74116333 - 74119659
Intron Length:
3327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTCTCCCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
79.9
0.67
0.8
73.8
30.6
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
45.5
-0.2
2
70.16
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017960
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019106
74115176 - 74120181
5006