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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74191290_74207938_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74191290 - 74207938
Intron Length:
16649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGATTCTTACGT
Flanking Amino Acid:
ARRVFHLQPCESPPAAMSRN
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.5
42.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
34.8
-1.7
2.9
43.9
43.7
Minor BPS
54.4
0.22
1.9
72.9
43.9

Associated Gene:

Gene:
SLC4A11
Ensembl Gene ID:
ENSAPLG00000004523
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033164
74191017 - 74280081
89065
ENSAPLT00000041143
74191017 - 74277115
86099
ENSAPLT00000034703
74191017 - 74277115
86099