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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74235636_74244070_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74235636 - 74244070
Intron Length:
8435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTTTCTCCACA
Flanking Amino Acid:
VQYQQSWLCIICTIKSLQRR
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.8
0.78
0.7
80
25.5
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
55.1
0.15
2
70.77
41.8

Associated Gene:

Gene:
SLC4A11
Ensembl Gene ID:
ENSAPLG00000004523
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020641
74149628 - 74277115
127488
ENSAPLT00000041143
74191017 - 74277115
86099
ENSAPLT00000004670
74219282 - 74277115
57834
ENSAPLT00000034703
74191017 - 74277115
86099
ENSAPLT00000033164
74191017 - 74280081
89065
ENSAPLT00000028770
74195413 - 74277115
81703