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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74244195_74247180_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74244195 - 74247180
Intron Length:
2986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTCACATTT
Flanking Amino Acid:
VILVLAPPKMKSTKTATEVG
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.8
0.78
0.7
81.9
22.9
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
49
0
2
76.74
40.1

Associated Gene:

Gene:
SLC4A11
Ensembl Gene ID:
ENSAPLG00000004523
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028770
74195413 - 74277115
81703
ENSAPLT00000020641
74149628 - 74277115
127488
ENSAPLT00000041143
74191017 - 74277115
86099
ENSAPLT00000004670
74219282 - 74277115
57834
ENSAPLT00000034703
74191017 - 74277115
86099
ENSAPLT00000033164
74191017 - 74280081
89065