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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74247388_74252214_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74247388 - 74252214
Intron Length:
4827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GAGCCTTTAAAC
Flanking Amino Acid:
HKSHSPKPLKLHEFLNVGKG
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
85.2
0.79
0.6
84.8
22.9
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
56.9
0.19
1.4
59.37
39

Associated Gene:

Gene:
SLC4A11
Ensembl Gene ID:
ENSAPLG00000004523
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020641
74149628 - 74277115
127488
ENSAPLT00000041143
74191017 - 74277115
86099
ENSAPLT00000004670
74219282 - 74277115
57834
ENSAPLT00000034703
74191017 - 74277115
86099
ENSAPLT00000033164
74191017 - 74280081
89065
ENSAPLT00000028770
74195413 - 74277115
81703