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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74252300_74258020_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74252300 - 74258020
Intron Length:
5721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTGG
5'SS Class:
major
3'SS Sequence:
GTTTACACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TTTGGGTTTACA
Flanking Amino Acid:
FPVYALDFTDGIIGNNKAIG
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
64.1
42.6
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
70
0.45
0.9
60.4
41.1
Minor 5ss
45.8
-0.4
2.5
55
44.5
Minor BPS
44.5
-0.4
2.7
66.85
45.6

Associated Gene:

Gene:
SLC4A11
Ensembl Gene ID:
ENSAPLG00000004523
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034703
74191017 - 74277115
86099
ENSAPLT00000004670
74219282 - 74277115
57834
ENSAPLT00000033164
74191017 - 74280081
89065
ENSAPLT00000028770
74195413 - 74277115
81703
ENSAPLT00000041143
74191017 - 74277115
86099
ENSAPLT00000020641
74149628 - 74277115
127488